- AtIDB, a genome browser for Arabidopsis thaliana
- AtEnsembl, a genome browser for Arabidopsis thaliana
- NASC stock catalogue, holds the worldwide collection of Arabidopsis lines. NASC maintains over 300,000 accessions of Arabidopsis thaliana representing over half a million genotypes
- NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database, which contains over 1,500 Affymetrix genechips belonging to over 100 experiments
- PlantCare
- MAtDB, MIPS Arabidopsis thaliana database is the www access to data of the Arabidopsis Genome Initiative compiled, analysed, annotated and stored at MIPS by the MIPS plant group
- MAtDB2, a new version of MAtDB. It includes TIGR and MAtDB annotation in the PlaNet look and feel
- WAtDB, a new database with curated data on mutants, transgenic lines and natural variants offering accurate and detailed formal description, phenotype images and relevant genome information, such as the genomic position of a transposon.
- rRNA-DB
- GnpSeq, a database of plant's expressed sequences. It aims to group similar sequences into clusters and alignements. GnpSeq allows to make complex queries on libraries (to pinpoint differential expressions), annotations, Gene ontologies ...
- GnpMap, a plant genetic map database, that stores populations, maps, loci, markers, QTL and traits.
- Phytoprot, a database of clusters of plant proteins (arabidopsis vs arabidopsis, arabidopsis vs other plants). This enables an immediate and intuitive representation of the relationships between sequences in a given cluster.
- GeneFarm, a database of structural and functional annotation of Arabidopsis gene and protein families by a network of experts
- Regia
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- ACT, The Arabidopsis Co-expression Tool (ACT) calculates gene co-expression patterns from NASCArrays data - useful for putting the role of each gene into a wider biological context of other co-expressed, cooperating or anti-correlated genes.